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What We Do

🔬 Build Microbiome Research Capacity in Puerto Rico

PR-CMS accelerates and expands microbiome research at the University of Puerto Rico Medical Sciences Campus by creating an innovative, collaborative platform for discovery, training, and data-driven science

🧬 Advance Cutting-Edge Microbiome Science

We support state-of-the-art microbiome research spanning data generation, sequencing, and advanced analyses—establishing the first microbiome research core facility of its kind in the Caribbean

👩🏽‍🔬 Develop the Next Generation of Scientists

PR-CMS fosters the growth of early-career investigators into competitive, independent researchers through mentorship, infrastructure, and professional development support

🤝 Promote Interdisciplinary & Translational Collaboration

We bring together basic, clinical, and data scientists to address microbiome-driven biomedical challenges and to strengthen interdisciplinary collaborations across campus and beyond

🧪 Provide Shared Research Infrastructure

PR-CMS is supported by three integrated cores:

  • Administrative Core – leadership, infrastructure, and faculty development
  • Microbiome Research Core – data production, sequencing, and analysis
  • Research Support Core – sustained support for junior research project leaders

🌎 Connect Puerto Rico to National Microbiome Networks

We are an active member of the Microbiome Centers Consortium, contributing to shared resources, data standards, and ethical research practices across the U.S. microbiome community

Who We Are

Who we are

ourcampus2 minThe Puerto Rico Center for Microbiome Sciences (PR-CMS) is the premier microbiome research center in the Caribbean region, established at the University of Puerto Rico Medical Sciences Campus through an NIH NIGMS COBRE award. Our mission is to accelerate microbiome research, expand scientific capacity, and cultivate an interdisciplinary community at the forefront of microbiome discovery.

As the first center of its kind in the Caribbean, the PR-CMS provides state-of-the-art sequence data analysis, and research support to investigators across Puerto Rico. By integrating expertise in microbiology, data science, clinical research, and translational science, the Center serves as a powerful platform for innovation in health, disease, behavior, and environmental microbiome studies.

The PR-CMS is built upon three coordinated cores:

  • Administrative Core – Strengthens research infrastructure and leads faculty development initiatives.
  • Microbiome Research Core – Provides cutting-edge instrumentation and data-analysis capabilities.
  • Research Support Core – Supports the work of early-career Research Project Leaders (RPLs) and other faculty users of the COBRE facility, advancing microbiome-driven studies in areas such as mental health, seizure disorders, cancer and others.

Through these programs, the PR-CMS fosters the growth of meritorious junior investigators, promotes interdisciplinary collaboration, and expands research opportunities for students, trainees, and scientists at all levels across the island.

The PR-CMS is also a member of the U.S. Microbiome Centers of Excellence Consortium, connecting Puerto Rico to a nationwide network dedicated to setting data standards, sharing resources, and advancing ethical microbiome research.

Check out the Newsletter September 2025 of  the Microbiome Centers Consortium (MCC), announcing our center’s partnership

Our Mission

The Puerto Rico Center for Microbiome Sciences is dedicated to advancing microbiome research in the region by establishing itself as a premier resource center, equipped with instrumentation, robust analytical capabilities, and comprehensive training opportunities. 

By providing essential infrastructure and expert guidance, the Center ensures accessibility to cutting-edge microbiome science for researchers at every career stage across Puerto Rico, promoting a broader participation in scientific discovery. 

Moreover, through enhancing microbiome literacy and fostering a diverse scientific workforce, the PR-CMS positions Puerto Rico as a pivotal hub for microbiome research, addressing critical questions in health, disease, and industrial innovation.

The PR-CMS is fully aligned with the mission of the University of Puerto Rico and that of the Medical Sciences Campus by advancing education, research, and innovation in microbiome science. Through cutting-edge training programs, the PR-CMS will educate a diverse and competent new generation of physicians, researchers, and biomedical scientists. 

The center’s initiatives in data integration, bioinformatics, and multi-omics not only enhance research capacity but also elevate the quality and relevance of research and teaching across the biomedical sciences.

In alignment with UPR’s commitment to serve humanity, PR-CMS will strive to improve the quality of life for all through equitable and impactful microbiome research.

 

News and Events

  • From soil to outer space: our interview with JAM Systems Microbiology Lead Editor Janet Jansson

    We get to know Janet Jansson, who has been appointed as new Lead Editor in Systems Microbiology at the Journal of Applied Microbiology.

    Read more

  • Paper reveals huge enthusiasm for Caribbean microbiome hub at inaugural symposium

    Turnout at a recent symposium has confirmed the appetite for a new microbiome hub in Puerto Rico, reveals Puerto Rico AMI Global Ambassador Dr. Filipa Godoy-Vitorino.

    Read more

  • Nueva subvención NIH/NIAID SuRE de $596,000 otorgada al Dr. Mark Miller

    Para el proyecto Targeting Snail Reproduction to Block Schistosomiasis Transmission.

    Read more

  • New grant award to Dr Yancy Ferrer’s mentor Dr. Cristina Velazquez; Award: Catalyst Grant

    From the Puerto Rico Science, Technology & Research Trust (PRSTRT).
  • Excited to see the success of the 1st Microbiome Symposium of Puerto Rico & the Caribbean

    Organized through our COBRE grant, the Puerto Rico Center for Microbiome Sciences (PR-CMS), and highlighted by Applied Microbiology International

    Read more

  • Just out in Frontiers in Public health

    This work highlights the importance of collaborative, interdisciplinary research to better understand how environmental and climate factors shape health outcomes in our communities

    Read more

  • El virus del papiloma humano está más asociado a microbiomas inestables– Dra. Filipa Godoy

    26 Abril 2026 San Juan, PR

    Read more

  • Ciencias Médicas celebra el Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    02 Marzo 2026 San Juan, PR

    Read more

  • El microbioma redefine la enfermedad y marca un nuevo rumbo en Puerto Rico

    23 Mar 2026 San Juan, PR

    Read more

  • ¿Invasión de hongos? Más organismos fungales resisten temperaturas altas

    20 Marzo 2026 San Juan, PR

    Read more

  • Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    28 feb 2026 San Juan, PR

    Read more

  • Ciencias Médicas lidera primer simposio caribeño de microbiomas

    28 Feb 2026 San Juan, PR

    Read more

  • Ciencias Médicas celebra el Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    28 feb 2026 San Juan, PR

    Read more

  • A peer-reviewed microbiome conversation with Dr. Janet Jansson and Dr. Maria Gloria Dominguez-Bello

    18 mar 2026 San Juan, PR

    View Video

  • Puerto Rico consolida liderazgo científico en microbioma con simposio regional de alto impacto

    28 feb 2026 San Juan, PR

    Read more

  • Ciencias Médicas celebra el Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    28 feb 2026 San Juan, PR

    Read more

  • Eje cerebro-intestino: Clave en el diagnóstico de alzhéimer

    03 Feb 2026 San Juan, PR

    Read more

  • Microbiota cervical y su relación con el cáncer en puertorriqueñas

    Jan 20, 2026, San Juan, PR

    Read more

  • The creation of the Microbiome Center of Puerto Rico

    Nov 05, 2025, San Juan, PR

    Read more

  • The Microbiome Center of Puerto Rico

    Oct16, 2025, San Juan, PR

    Read more

  • COBRE PR-CMS Kick off meeting

    May 30, 2025, San Juan, PR

    In a transformative leap for science and innovation in the Caribbean, the University of Puerto Rico Medical Sciences Campus (UPR-MSC) has been awarded an $11.3 million NIH-COBRE grant (National Institute of General and Medical Sciences) to establish the Puerto Rico Center for Microbiome Sciences (PR-CMS)—the first of its kind in the region.

    Read more

  • “Los microbiomas son arquitectos de la biología”: Casa llena para conocer el nuevo Puerto Rico Center for Microbiome Sciences

    May 30, 2025, San Juan, PR

    La Biblioteca Conrado F. Asenjo vibró la tarde del 16 de octubre de 2025 con la conferencia “Microbiomes as Architects of Biology: The Role of the New Puerto Rico Center for Microbiome Sciences in Catalyzing Discovery”, ofrecida por la Dra. Filipa Godoy Vitorino, Directora del Departamento de Microbiología y PI del Microbiomes Lab de la Escuela de Medicina.

    Read more

  • A New Microbiome Research Center in Puerto Rico!

    Dic 09, 2025, San Juan, PR

    Exciting news for science and health! Filipa Godoy-Vitorino, a longtime AAAS member and former President of the Caribbean Division, is leading the COBRE: Center for Microbiome Sciences in Puerto Rico, the first microbiome research center in the Caribbean. 

    Read more

  • Ciencias Médicas expone impacto del medioambiente en la salud

    Dic 09, 2025, San Juan, PR

    En un esfuerzo por profundizar en la relación entre el entorno, el cáncer y el microbioma, el Recinto de Ciencias Médicas de la Universidad de Puerto Rico (RCM-UPR) celebró el seminario “Medioambiente, Cáncer y Microbioma: Perspectivas Interdisciplinarias desde Puerto Rico”.

    Read more

  • El Recinto de Ciencias Médicas de la UPR recibe $11.3 millones para lanzar un centro pionero de Ciencias del Microbioma

    Dic 09, 2025, San Juan, PR

    El Recinto de Ciencias Médicas de la Universidad de Puerto Rico ha recibido una prestigiosa subvención de $11.3 millones del Instituto Nacional de Ciencias Médicas Generales (NIGMS)

    Read more

  • Puerto Rico lanza primer centro de investigación en microbioma con subvención de $11.3 millones del NIH

    Dic 09, 2025, San Juan, PR

    En un hito científico sin precedentes para la región, el Recinto de Ciencias Médicas (RCM) de la Universidad de Puerto Rico (UPR) ha recibido una subvención de $11.3 millones del Instituto Nacional de Ciencias Médicas Generales (NIGMS), parte de los Institutos Nacionales de la Salud (NIH), para establecer el Centro de Ciencias del Microbioma de Puerto Rico (PR-CMS).

    Read more

  • Puerto Rico launches first Microbiome Research Center in the Caribbean

    Dic 09, 2025, San Juan, PR

    In a transformative leap for science and innovation in the Caribbean, the University of Puerto Rico Medical Sciences Campus (UPR-MSC) has been awarded an $11.3 million NIH-COBRE grant (National Institute General and Medical Sciences) to establish the Puerto Rico Center for Microbiome Sciences (PR-CMS)—the first of its kind in the region.

    Read more

  • RCM creará primer centro de microbioma del Caribe con fondos del NIH

    Dic 09, 2025, San Juan, PR

    El Recinto de Ciencias Médicas (RCM) de la Universidad de Puerto Rico recibió una subvención de $11.3 millones de los Institutos Nacionales de la Salud (NIH) para establecer el primer Centro de Ciencias del Microbioma de Puerto Rico (PR-CMS)

    Read more

  • UPR recibe $11.3 millones para crear el primer centro de investigación en microbioma del Caribe

    Dic 09, 2025, San Juan, PR

    El Recinto de Ciencias Médicas (RCM) de la Universidad de Puerto Rico (UPR) ha sido galardonado con una subvención de $11.3 millones del Instituto Nacional de Ciencias Médicas Generales (NIGMS)

    Read more

Newsletters (see pdf)

Microbiome Symposia

UPR recibe $11.3 millones para crear el primer centro de investigación en microbioma del Caribe

Dic 09, 2025, San Juan, PR

El Recinto de Ciencias Médicas (RCM) de la Universidad de Puerto Rico (UPR) ha sido galardonado con una subvención de $11.3 millones del Instituto Nacional de Ciencias Médicas Generales (NIGMS)

Read more

Newsletters (see pdf)

Puerto Rico Center for Microbiome Sciences

The Puerto Rico Center for Microbiome Sciences (PR-CMS), established at the University of Puerto Rico Medical Sciences Campus through an NIH COBRE award, is the first microbiome research hub in the Caribbean. Its mission is to accelerate microbiome research, expand scientific capacity, and foster an interdisciplinary community.

Learn more about PR-CMS

Research at the puerto rico center
for microbiome sciences

Learn More

COBRE Microbiome
Club

Learn More

  • Excited to see the success of the 1st Microbiome Symposium of Puerto Rico & the Caribbean

    Noticias Recientes

    Organized through our COBRE grant, the Puerto Rico Center for Microbiome Sciences (PR-CMS), and highlighted by Applied Microbiology International Read more

    Ver completo

  • El virus del papiloma humano está más asociado a microbiomas inestables– Dra. Filipa Godoy

    Noticias Recientes

    26 Abril 2026 San Juan, PR

    Ver completo

  • Ciencias Médicas celebra el Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    Noticias Recientes

    02 Marzo 2026 San Juan, PR

    Ver completo

  • Just out in Frontiers in Public health

    Noticias Recientes

    This work highlights the importance of collaborative, interdisciplinary research to better understand how environmental and climate factors shape health outcomes in our communities

    More Information

  • El microbioma redefine la enfermedad y marca un nuevo rumbo en Puerto Rico

    Noticias Recientes

    23 Mar 2026 San Juan, PR

    Ver completo

  • ¿Invasión de hongos? Más organismos fungales resisten temperaturas altas

    Noticias Recientes

    20 Marzo 2026 San Juan, PR

    Ver completo

  • Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    Noticias Recientes

    28 feb 2026 San Juan, PR

    Ver completo

  • Ciencias Médicas lidera primer simposio caribeño de microbiomas

    Noticias Recientes

    28 Feb 2026 San Juan, PR

    Ver completo

  • Ciencias Médicas celebra el Primer Simposio de Microbiomas de Puerto Rico y el Caribe

    Noticias Recientes

    28 feb 2026 San Juan, PR

    Ver completo

  • A peer-reviewed microbiome conversation with Dr. Janet Jansson and Dr. Maria Gloria Dominguez-Bello

    Noticias Recientes

    18 mar 2026 San Juan, PR

    Ver completo

  • Puerto Rico consolida liderazgo científico en microbioma con simposio regional de alto impacto

    Noticias Recientes

    28 feb 2026 San Juan, PR

    Ver completo


VIEW ALL NEWS AND EVENTS


PR-CMS Research Output

Recent Publications & Accepted Manuscripts

Discover our latest high-impact scientific contributions advancing microbiome research, environmental health, and disease prevention in Puerto Rico and the Caribbean.

VIEW ALL PUBLICATIONS


Sustain Microbiol - Jul 2026 • PMID: 42592337

Community Dynamics in a Changing World: highlights from the 1st Puerto Rico & Caribbean Microbiome Symposium and vision for a new microbiome hub

Godoy-Vitorino F.

Citation: Sustain Microbiol. 2026 Jul 23;3(3):qvag030.
DOI: 10.1093/sumbio/qvag030

 View more

Front Public Health Apr 2026 • PMID: 42145481

Environmental exposures, microbiome dynamics and chronic disease risk in climate-vulnerable regions: interdisciplinary perspectives from Puerto Rico

Godoy-Vitorino F, Méndez-Lázaro P, Bolaños-Rosero B, Baerga-Ortiz A, Torres-Rodríguez P, Sosa MA...

Citation: Sustain Microbiol. 2026 Jul 23;3(3):qvag030.
DOI: 10.1093/sumbio/qvag030

 View more

COBRE Puerto Rico Center for Microbiome Sciences

Latest News

View All News

  • 1st Microbiome
    Symposium

    View More

  • Science Cafe on Dr Yancy Ferrer's COBRE Research project communicated broadly to the community through AAAS ...

    View More

  • Conference AND ROUNDTABLE International Society for Microbial Ecology (ISME) Latin American Symposium

    View More

  • Conference NIH 2nd Symposium of Women’s Health Research in the IDeA States

    View More

Contact Us

University of Puerto Rico, Medical Sciences Campus, School of Medicine

Microbiology Department, Guillermo Arbona building, Suite A376
PO Box 365067
San Juan, PR 00936-5067

Filipa Godoy-Vitorino
Director
Phone: 787-758-25252 ext 2096
Email: This email address is being protected from spambots. You need JavaScript enabled to view it.

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COBRE PR-CMS Kick off meeting

May 30, 2025, San Juan, PR

In a transformative leap for science and innovation in the Caribbean, the University of Puerto Rico Medical Sciences Campus (UPR-MSC) has been awarded an $11.3 million NIH-COBRE grant (National Institute of General and Medical Sciences) to establish the Puerto Rico Center for Microbiome Sciences (PR-CMS)—the first of its kind in the region.

Read more

Past Events

  • Seminar by Dr. Curtis Huttenhower.

    Event Date 02 -09-2026

    Read more

  • Plenary Session: Human Microbiome and Physiology – A Special Focus for Physical Medicine and Rehabilitation

    Event Date 29 -08-2026

    Read more

  • HiREC Summit at the Caribe Hilton.

    Event Date 27 -08-2026

    Read more

  • AAAS-LSEN Science Café featuring Dr. Filipa Godoy

    Event Date 19 -08-2026

    Conversatorio informal enfocado en divulgación científica, donde se discuten temas relacionados con la salud, la alimentación, los parásitos y el microbioma humano en un ambiente relajado fuera del entorno académico tradicional.

    Read more

  • Participation of COBRE staff and leadership at the NISBRE 2026 in Bethesda, MD June 2026

    Event Date 19 -08-2026

    Seminario especial: Microbioma en las primeras etapas de la vida y sus efectos en la salud

    Read more

  • Participation of COBRE staff and leadership at the NISBRE 2026 in Bethesda, MD June 2026

    Event Date 11 June 2026

    Read more

  • Metabolomics Data Analysis and Interpretation

    Event Date 11 June 2026

    El Puerto Rico Center for Microbiome Sciences (COBRE), en colaboración con PR-INBRE, te invita cordialmente a su seminario mensual especial titulado "Metabolomics Data Analysis and Interpretation".

    Read more

  • Seminario COBRE Innovación bioinformática aplicada al diagnóstico clínico

    Event Date 04 May 2026

    Seminario COBRE Innovación bioinformática aplicada al diagnóstico clínico

    Read more

  • May 22 web COBRE compliance

    Event Date: 22 May 2026

    On May 22, the Neuroplasticity COBRE joined COBRE CPCHE and COBRE PR-CMS on a joint orientation to address and clarify foreign component policy and institutional compliance with federal regulations.

    Read more

  • Science Cafe on Dr Yancy Ferrer's COBRE Research project communicated

    Event Date: 20 May 2026

    Broadly to the community through AAAS LSEN at Cervcera El Eden in San Juan Puerto Rico, amazing turnover and full house

    Read more

  • Dr Godoy shares the COBRE program with the medical community in Caguas, Puerto Rico

    Event Date: 16 Apr 2026

    As Keynote Speaker at the 10th Interdisciplinary research symposia of the San Juan Bautista School of Medicine

    Read more

  • Vitamin B12 as a Model Nutrient for the Study of Soil Bacterial Interactions

    Event Date: 15 Apr 2026

    Read more

  • Taller de Extracción de ADN: Sesión Teórica y Práctica de Laboratorio

    Event Date: 10 Apr 2026

    Read more

  • 64ta Conferencia Anual en Memoria de Bailey K. Ashford.

    Event Date: 27 Mar 2026

    Read more

  • EAC Meeting and Annual Retreat

    Event Date 26 -02-2026

    Read more

  • 1st Microbiome Symposium: Puerto Rico and the Caribbean

    Event Date 28 -02-2026

    1st Microbiome Symposium: Puerto Rico and the Caribbean — Program

    Read more

  • EAC

    Event Date: 26 y 27-Feb-2026

    Read more

  • SYMPOSIUM

    Event Date: 28-Feb-2026

    Read more

  • SEMINAR & Metagenomcis Workshop

    Event Date: 01-2026

    The screening session (~1 h 15 min) will conclude with a commentary by Dr. Katrine Whiteson, UC Irvine, expert in bacteriophages as options for the treatment of antibiotic-resistant infections.

    Read more

  • RADIO ISLA 1320 Puerto Rico’s leading station for news and analysis.

    Event Date: 19-Dic-2025

    Read more

  • Genética de poblaciones: La evolución de los patógenos

    Event Date: 18-Dic-2025

    Read more

  • Seminar COBRE Microbiome Dr Cornejo

    Event Date: 17-Dic-2025

    Read more

  • MEET-UP Multicenter

    Event Date: 14-Nov-2025

    Read more

  • Library conference

    Event Date: 17-Oct-2025

    Read more

  • IMILCE seminar

    Event Date: 15-Oct-2025

    Read more

  • Rio piedras conference

    Event Date: 14-Oct-2025

    Read more

  • Outreach event at g8 community talking about microbiome and diet

    Event Date: 11-Sep-2025

    Read more

  • Dr Colberg Seminar

    Event Date: 24-Sep-2025

    Read more

  • Ismelat mexico conference COBRE

    Event Date: 15-Aug-2025

    Read more

  • Kickoff COBRE

    Event Date: 30-May-2025

    Read more

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